Homology modelling of dipteran specific Cry proteins of Bt: Physicochemical and functional characterization, secondary structure prediction, model building and validation - Brossura
Sinossi
Physico-chemical characterization of 4 cry proteins was done and interpreted the properties such as molecular weight, pI, EC, AI, GRAVY, amino acid composition and instability index. The highest GRAVY and AI value were found in Cry4Aa (0.827) and cry2Aa 1(84.53). Prediction of motifs, patterns, disulfide bridges and secondary structure, transmembrane regions and domains of Cry proteins were performed for functional characterization. Four template sequences (1I5P, ADL6, 2C9K and 1W99) were used for homology modeling (Swiss Model and EsyPred3D) to predict the 3D structure. The LG score for 1I5P, ADL6, 2C9K and 1W99 template shown in Swissmodel and EsyPred was extremely a good model. Active sites of the protein was determined by CASTp server and ranged from 83-239. The pocket area and volume ranged from 422.9 – 5828 and 518.1-3719.2, respectively. The validation for structure models was performed by using PROCHECK. The models were further checked with WHAT IF. Both the structures were analyzed using ProFunc tool which showed to have different functions as they had different structures and active sites. Thereby the structure plays a vital role in determining its function.
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L'autore
Gurusubramanian Guruswami, PhD:Studied Zoology at University of Madras. Associate Professor at Mizoram University, Tanhril, Aizawl, Mizoram, India.Vikas Kumar Roy, PhD:Studied Zoology at Banaras Hindu University.Assistant Professor at Mizoram University, Tanhril, Aizawl, Mizoram, India.Lalrempuii, M.Sc: Studied Zoology at Mizoram University.
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Homology modelling of dipteran specific Cry proteins of Bt
Editore:
LAP LAMBERT Academic Publishing Jul 2014, 2014
ISBN 10: 3659570516
ISBN 13: 9783659570513
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Da: BuchWeltWeit Ludwig Meier e.K., Bergisch Gladbach, Germania
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Taschenbuch. Condizione: Neu. This item is printed on demand - it takes 3-4 days longer - Neuware -Physico-chemical characterization of 4 cry proteins was done and interpreted the properties such as molecular weight, pI, EC, AI, GRAVY, amino acid composition and instability index. The highest GRAVY and AI value were found in Cry4Aa (0.827) and cry2Aa 1(84.53). Prediction of motifs, patterns, disulfide bridges and secondary structure, transmembrane regions and domains of Cry proteins were performed for functional characterization. Four template sequences (1I5P, ADL6, 2C9K and 1W99) were used for homology modeling (Swiss Model and EsyPred3D) to predict the 3D structure. The LG score for 1I5P, ADL6, 2C9K and 1W99 template shown in Swissmodel and EsyPred was extremely a good model. Active sites of the protein was determined by CASTp server and ranged from 83-239. The pocket area and volume ranged from 422.9 - 5828 and 518.1-3719.2, respectively. The validation for structure models was performed by using PROCHECK. The models were further checked with WHAT IF. Both the structures were analyzed using ProFunc tool which showed to have different functions as they had different structures and active sites. Thereby the structure plays a vital role in determining its function. 68 pp. Englisch. Codice articolo 9783659570513
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Homology modelling of dipteran specific Cry proteins of Bt
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LAP LAMBERT Academic Publishing, 2014
ISBN 10: 3659570516
ISBN 13: 9783659570513
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Da: moluna, Greven, Germania
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Condizione: New. Dieser Artikel ist ein Print on Demand Artikel und wird nach Ihrer Bestellung fuer Sie gedruckt. Autor/Autorin: Guruswami GurusubramanianGurusubramanian Guruswami, PhD:Studied Zoology at University of Madras. Associate Professor at Mizoram University, Tanhril, Aizawl, Mizoram, India.Vikas Kumar Roy, PhD:Studied Zoology at Banaras Hindu Univers. Codice articolo 5165504
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Homology modelling of dipteran specific Cry proteins of Bt
Editore:
LAP LAMBERT Academic Publishing Jul 2014, 2014
ISBN 10: 3659570516
ISBN 13: 9783659570513
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Taschenbuch
Da: buchversandmimpf2000, Emtmannsberg, BAYE, Germania
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Taschenbuch. Condizione: Neu. This item is printed on demand - Print on Demand Titel. Neuware -Physico-chemical characterization of 4 cry proteins was done and interpreted the properties such as molecular weight, pI, EC, AI, GRAVY, amino acid composition and instability index. The highest GRAVY and AI value were found in Cry4Aa (0.827) and cry2Aa 1(84.53). Prediction of motifs, patterns, disulfide bridges and secondary structure, transmembrane regions and domains of Cry proteins were performed for functional characterization. Four template sequences (1I5P, ADL6, 2C9K and 1W99) were used for homology modeling (Swiss Model and EsyPred3D) to predict the 3D structure. The LG score for 1I5P, ADL6, 2C9K and 1W99 template shown in Swissmodel and EsyPred was extremely a good model. Active sites of the protein was determined by CASTp server and ranged from 83-239. The pocket area and volume ranged from 422.9 ¿ 5828 and 518.1-3719.2, respectively. The validation for structure models was performed by using PROCHECK. The models were further checked with WHAT IF. Both the structures were analyzed using ProFunc tool which showed to have different functions as they had different structures and active sites. Thereby the structure plays a vital role in determining its function.Books on Demand GmbH, Überseering 33, 22297 Hamburg 68 pp. Englisch. Codice articolo 9783659570513
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Homology modelling of dipteran specific Cry proteins of Bt : Physicochemical and functional characterization, secondary structure prediction, model building and validation
Editore:
LAP LAMBERT Academic Publishing, 2014
ISBN 10: 3659570516
ISBN 13: 9783659570513
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Taschenbuch
Da: AHA-BUCH GmbH, Einbeck, Germania
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Taschenbuch. Condizione: Neu. nach der Bestellung gedruckt Neuware - Printed after ordering - Physico-chemical characterization of 4 cry proteins was done and interpreted the properties such as molecular weight, pI, EC, AI, GRAVY, amino acid composition and instability index. The highest GRAVY and AI value were found in Cry4Aa (0.827) and cry2Aa 1(84.53). Prediction of motifs, patterns, disulfide bridges and secondary structure, transmembrane regions and domains of Cry proteins were performed for functional characterization. Four template sequences (1I5P, ADL6, 2C9K and 1W99) were used for homology modeling (Swiss Model and EsyPred3D) to predict the 3D structure. The LG score for 1I5P, ADL6, 2C9K and 1W99 template shown in Swissmodel and EsyPred was extremely a good model. Active sites of the protein was determined by CASTp server and ranged from 83-239. The pocket area and volume ranged from 422.9 - 5828 and 518.1-3719.2, respectively. The validation for structure models was performed by using PROCHECK. The models were further checked with WHAT IF. Both the structures were analyzed using ProFunc tool which showed to have different functions as they had different structures and active sites. Thereby the structure plays a vital role in determining its function. Codice articolo 9783659570513
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