This is Volume II of the four-volume set LNCS 3991-3994 constituting the refereed proceedings of the 6th International Conference on Computational Science, ICCS 2006. The 98 revised full papers and 29 revised poster papers of the main track presented together with 500 accepted workshop papers were carefully reviewed and selected for inclusion in the four volumes. The coverage spans the whole range of computational science.
Third International Workshop on Simulation of Multiphysics Multiscale Systems.- Numerical Modeling of Plasma – Flow Interaction.- Numerical Methods for Reacting Gas Flow Simulations.- Reduced Flame Kinetics Via Rate-Controlled Constrained Equilibrium.- Flow Patterns in the Vicinity of Triple Line Dynamics Arising from a Local Surface Tension Model.- A Multilevel-Multigrid Approach to Multiscale Electromagnetic Simulation.- Scalable Simulation of Electromagnetic Hybrid Codes.- Numerical Modelling of Poroviscoelastic Grounds in the Time Domain Using a Parallel Approach.- Numerical Modeling of Tidal Effects and Hydrodymanics in the Po River Estuary.- Adaptive Mesh Refinement and Domain Decomposition: A Framework to Study Multi-physical and Multi-scale Phenomena. First Application to Reacting Gas Flows.- Time Splitting and Grid Refinement Methods in the Lattice Boltzmann Framework for Solving a Reaction-Diffusion Process.- Mesoscopic Simulations of Unsteady Shear-Thinning Flows.- A Multiphysics Model of Capillary Growth and Remodeling.- Liquid Computations and Large Simulations of the Mammalian Visual Cortex.- Which Meshes Are Better Conditioned: Adaptive, Uniform, Locally Refined or Locally Adjusted?.- Parallel Simulation of Three–Dimensional Bursting with MPI and OpenMP.- Numerical Simulation of Phase Transformations in Shape Memory Alloy Thin Films.- A Virtual Test Facility for Simulating Detonation-Induced Fracture of Thin Flexible Shells.- Data-Driven Inverse Modelling of Ionic Polymer Conductive Composite Plates.- Innovations in Computational Science Education.- Exploiting Real-Time 3d Visualisation to Enthuse Students: A Case Study of Using Visual Python in Engineering.- Involving Undergraduates in Computational Science and Engineering Research: Successes and Challenges.- A Project Based Approach to Teaching Parallel Systems.- Learning by Doing: Software Projects in CSE Education.- Computational Math, Science, and Technology (CMST): A Strategy to Improve STEM Workforce and Pedagogy to Improve Math and Science Education.- The School of Computational Science at Florida State University.- Teaching the Foundations of Computational Science on the Undergraduate Level.- Computational Science: An Intermingling of Science, Mathematics, and Computer Science.- A Framework for Conceptually Modelling the Domain Knowledge of an Instructional System.- Platyhelminthes Are [Re]constructed Recursively.- Fifth International Workshop on Computer Graphics and Geometric Modeling (CGGM 2006).- Extensions for 3D Graphics Rendering Engine Used for Direct Tessellation of Spline Surfaces.- An Evolution Computation Based Approach to Synthesize Video Texture.- Deformation of Dynamic Surfaces.- A New Smoothing Algorithm for Quadrilateral and Hexahedral Meshes.- The Calculation of Parametric NURBS Surface Interval Values Using Neural Networks.- Characterizing and Covering Some Subclasses of Orthogonal Polygons.- Techniques for Computing Viewpoint Entropy of a 3D Scene.- 3D Object Repair Using 2D Algorithms.- Extraction of Ridges-Valleys for Feature-Preserving Simplification of Polygonal Models.- Multiresolution 3D Rendering on Mobile Devices.- Multiresolution Remeshing Using Weighted Centroidal Voronoi Diagram.- Metric 3D Surface Mesh Generation Using Delaunay Criteria.- A Multiresolution Model for Non-photorealistic Rendering of Trees.- Model Creation by Velocity Controlled Surface Deformation.- Rendering of Unorganized Points with Octagonal Splats.- Statistical Based Vectorization for Standard Vector Graphics.- Robustly Computing Intersection Curves of Two Canal Surfaces with Quadric Decomposition.- Triangle Strip Multiresolution Modelling Using Sorted Edges.- Improvement Construction for Planar G2 Transition Curve Between Two Separated Circles.- B-Spline Curve Fitting Using Dominant Points.- Quality and Performance Evaluation of Ray-Space Interpolation for Free Viewpoint Video Systems.- Framework for Adaptive Sampling of Point-Based Surfaces Using Geometry and Color Attributes.- Fourth International Workshop on Computer Algebra Systems and Applications (CASA 2006).- Normalizing Relational Database Schemas Using Mathematica.- Extending Maple Capabilities for Solving and Displaying Inequalities.- Phase Response Curves, Delays and Synchronization in Matlab.- A Hybrid Approach for Normal Factorization of Polynomials.- Computer Algebra for the Formation of Structural Matrices of Piezoceramic Finite Elements.- Symbolic Analysis of Economical Models with Mathematica.- Polarizable Theta-Stable Parabolic Subalgebras and K ?-Saturation in the Non-compact Real Forms of G 2 and F 4.- Dynamic Load Balancing with MatlabMPI.- Maple Implementation of the Chor-Rivest Cryptosystem.- Development of TRIP: Fast Sparse Multivariate Polynomial Multiplication Using Burst Tries.- A Symbolic Approach to Quantum Computation Simulation.- Development of SyNRAC.- Automated Discovery in Elementary Extrema Problems.- Stabilizing Second-Order Linear Dynamic Systems Via Hybrid Output Feedback Controls.- Computation of the Adjoint Matrix.- MathBlackBoard as Effective Tool in Classroom.- Tools for Program Development and Analysis in Computational Science.- Finding Inefficiencies in OpenMP Applications Automatically with Periscope.- Analysis of the Spatial and Temporal Locality in Data Accesses.- A Performance Profile and Test Tool for Development of Embedded Software Using Various Report Views.- SCE Toolboxes for the Development of High-Level Parallel Applications.- Introducing the Open Trace Format (OTF).- Dynamic Instrumentation of Distributed Java Applications Using Bytecode Modifications.- Fine-Grained Instrumentation and Monitoring of Legacy Applications in a Service-Oriented Environment.- Monitoring of WS-Based Applications.- Using Sequential Debugging Techniques with Massively Parallel Programs.- Collaborative and Cooperative Environments.- Workflow for Integrated Object Detection in Collaborative Video Annotation Environments.- RMIX: A Dynamic, Heterogeneous, Reconfigurable Communication Framework.- Developing Collaborative Social Software.- An Efficient and Reflective Event Filtering for Context-Awareness in Ubiquitous Computing.- Creation and Control of Interactive Virtual Environments.- Using Haptics to Improve Immersion in Virtual Environments.- A Novel Navigation Algorithm for Locomotion Interfaces with Programmable Platforms.- Second International Workshop on Bioinformatics Research and Applications (IWBRA06).- Efficient and Practical Algorithms for Deducing the History of Recombination in Populations.- Chordal Graphs in Computational Biology – New Insights and Applications.- Exemplar Longest Common Subsequence.- Synonymous Codon Substitution Matrices.- SEPA: Approximate Non-subjective Empirical p-Value Estimation for Nucleotide Sequence Alignment.- Multiple Sequence Alignment by Ant Colony Optimization and Divide-and-Conquer.- COMBAT: Search Rapidly for Highly Similar Protein-Coding Sequences Using Bipartite Graph Matching.- Missing Values Estimation in Microarray Data with Partial Least Squares Regression.- Boost Feature Subset Selection: A New Gene Selection Algorithm for Microarray Dataset.- A Hybrid Feature Selection Approach for Microarray Gene Expression Data.- A Self-supervised Learning Framework for Classifying Microarray Gene Expression Data.- Pooling Evidence to Identify Cell Cycle–Regulated Genes.- Discovering Sequence-Structure Patterns in Proteins with Variable Secondary Structure.- Clustering Support Vector Machines and Its Application to Local Protein Tertiary Structure Prediction.- Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model.- A Multilevel Approach to Identify Functional Modules in a Yeast Protein-Protein Interaction Network.- Towards Detecting Protein Complexes from Protein Interaction Data.- High-Throughput SNP Genotyping by SBE/SBH.- Tag SNP Selection Based on Multivariate Linear Regression.- Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping.- Phasing of 2-SNP Genotypes Based on Non-random Mating Model.- Event Models for Tumor Classification with SAGE Gene Expression Data.- Genomes Containing Duplicates Are Hard to Compare.- Rearrangement of Noisy Genomes.- Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees.- Reconstructing Ancestor-Descendant Lineages from Serially-Sampled Data: A Comparison Study.- Robustness of Greedy Type Minimum Evolution Algorithms.- Space and Time Efficient Algorithms for Planted Motif Search.- Predictability of Rules in HIV-1 Protease Cleavage Site Analysis.- Statistical Feature Selection from Chaos Game Representation for Promoter Recognition.- Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L.- DigitalTree: A Tool for Displaying Biological Data in Tree Structure.- HiSP: A Probabilistic Data Mining Technique for Protein Classification.- Cross-Ontological Analytics: Combining Associative and Hierarchical Relations in the Gene Ontologies to Assess Gene Product Similarity.- A GO-Based Method for Assessing the Biological Plausibility of Regulatory Hypotheses.- Delays in Biological Regulatory Networks (BRN).- Phase Transitions in Gene Knockdown Networks of Transitive RNAi.- Third International Workshop on Practical Aspects of High-Level Parallel Programming (PAPP 2006).- Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors.- Using SBASCO to Solve Reaction-Diffusion Equations in Two-Dimensional Irregular Domains.- Higher Order Flattening.- Combining Measurement and Stochastic Modelling to Enhance Scheduling Decisions for a Parallel Mean Value Analysis Algorithm.- Joint Structured/Unstructured Parallelism Exploitation in muskel.- Co-Array Collectives: Refined Semantics for Co-Array Fortran.- An Approach to Buffer Management in Java HPC Messaging.- Wireless and Mobile Systems.- A Low Complexity and Robust Frequency Offset Estimation Algorithm for OFDM-Based WLAN Systems.- Simplified Signal Detection for BLAST Architecture with ML and DFE Detectors.- Scenario Decomposition Based Analysis of Next Generation Mobile Services.- A Power Saving Scheme for Integrated WLAN and Cellular Networks.- The Optimal Subchannel and Bit Allocation Problem for OFDM.- Bluetooth Broadcasting Performance: Reliability and Throughput.- An Optimized Two Factor Authenticated Key Exchange Protocol in PWLANs.- Adaptive Clustering with Virtual Subnets Support in Ad Hoc Networks.- A Service Management Architecture for NEMO in IPv4 and IPv6 Networks.- Overlapped Detection Via Approximate Entropy Estimation Against Flooding Attack in Mobile Sensor Networks.- Implementation of Next Generation Mobile Service: The Context-Aware Follow-Me Service.- Multi-piconet Formation to Increase Channel Utilization in IEEE 802.15.3 High-Rate WPAN.- Unencapsulated Mobile Multicast Routing for Next Generation Video Networks.- Channel Estimation of High Rate WPAN System with Diversity Technique.- A Timestamp Tree-Based Cache Invalidation Report Scheme in Mobile Computing Environments.- Clustering Versus Evenly Distributing Energy Dissipation in Wireless Sensor Routing for Prolonging Network Lifetime.- On the Effect of Heterogeneous Traffic Sources on the Network Availability for Wireless Sensor Grids.- Selective Handover Technique on Multihomed Mobile Network Environment.- Collaborative Trust-Based Shortest Secure Path Discovery in Mobile Ad Hoc Networks.- An Efficient Neighbor Knowledge Based Broadcasting for Mobile Ad Hoc Networks.- Maximum Lifetime Paths for the High Packet Delivery Ratio Using Fast Recovery in a Mobile Ad Hoc Network.- Erratum.- Synonymous Codon Substitution Matrices.- Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors.
