Genome-Scale Algorithm Design: Bioinformatics in the Era of High-Throughput Sequencing

Mäkinen, Veli; Belazzougui, Djamal; Cunial, Fabio; Tomescu, Alexandru I.

ISBN 10: 1009341235 / ISBN 13: 9781009341233

Editore: Cambridge University Press, 2023

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Dati bibliografici

• Titolo: Genome-Scale Algorithm Design: Bioinformatics in the Era of High-Throughput Sequencing
• Editore: Cambridge University Press
• Data di pubblicazione: 2023
• Lingua: Inglese
• ISBN 10: 1009341235
• ISBN 13: 9781009341233
• Rilegatura: Rilegato
• Edizione: seconda edizione
• Condizione: New

Descrizione articolo

Riassunto

Presenting the fundamental algorithms and data structures that power bioinformatics workflows, this book covers a range of topics from the foundations of sequence analysis (alignments and hidden Markov models) to classical index structures (k-mer indexes, suffix arrays, and suffix trees), Burrows–Wheeler indexes, graph algorithms, network flows, and a number of advanced omics applications. The chapters feature numerous examples, algorithm visualizations, and exercises, providing graduate students, researchers, and practitioners with a powerful algorithmic toolkit for the applications of high-throughput sequencing. An accompanying website (www.genome-scale.info) offers supporting teaching material. The second edition strengthens the toolkit by covering minimizers and other advanced data structures and their use in emerging pangenomics approaches.